import prismaid

# Run screening on manuscripts
with open("screening.toml", "r") as file:
    screening_config = file.read()
prismaid.screening(screening_config)

# Download papers from Zotero
prismaid.download_zotero_pdfs("username", "api_key", "collection_name", "./papers")  # Full name

# Download from URL list
prismaid.download_url_list("urls.txt")

# Convert files to text
prismaid.convert("./papers", "pdf,docx,html")

# Convert with Tika OCR fallback
prismaid.convert("./papers", "pdf", "localhost:9998")

# OCR-only for PDFs
prismaid.convert("./papers", "pdf", "localhost:9998", ocr_only=True)

# Run a systematic review
with open("project.toml", "r") as file:
    toml_config = file.read()
prismaid.review(toml_config)