# Screen manuscripts to filter out duplicates and irrelevant papers
./prismaid -screening screening_config.toml

# Download papers from Zotero (requires a TOML config file)
# First create a file zotero_config.toml with:
#   user = "your_username"
#   api_key = "your_api_key"
#   group = "Your Collection"
./prismaid -download-zotero zotero_config.toml

# Download papers from a URL list
./prismaid -download-URL paper_urls.txt

# Convert files to text (separate commands for each format)
./prismaid -convert-pdf ./papers
./prismaid -convert-docx ./papers
./prismaid -convert-html ./papers

# Initialize a new project configuration interactively
./prismaid -init

# Run a systematic review
./prismaid -project your_project.toml